Package: qgg 1.1.2

qgg: Statistical Tools for Quantitative Genetic Analyses

Provides an infrastructure for efficient processing of large-scale genetic and phenotypic data including core functions for: 1) fitting linear mixed models, 2) constructing marker-based genomic relationship matrices, 3) estimating genetic parameters (heritability and correlation), 4) performing genomic prediction and genetic risk profiling, and 5) single or multi-marker association analyses. Rohde et al. (2019) <doi:10.1101/503631>.

Authors:Peter Soerensen [aut, cre], Palle Duun Rohde [aut], Izel Fourie Soerensen [aut]

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qgg/json (API)
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Bug tracker:https://github.com/psoerensen/qgg/issues

On CRAN:

49 exports 34 stars 3.50 score 15 dependencies 2 mentions 43 scripts 367 downloads

Last updated 2 months agofrom:508bf458d9. Checks:OK: 1 WARNING: 8. Indexed: yes.

Exports:accadjLDadjLDStatadjStatadjustBadjustMapLDcheckStatcomputeROCcomputeStatdesignMatrixgbayesgblupgetGgetGRMgetLDgetLDsetsgetMapgetMarkersgetPosgetSparseLDgfilterglmagmapgprepgremlgrmgscoregseagsimgsimCgsimRgsolveldscldscoremapSetsmapStatmergeGRMmtadjplotBayesplotForestplotLDplotROCpredict_auc_mt_ccpredict_auc_mt_continuouspredict_auc_stpredict_r2_mtpredict_r2_stsplitWithOverlapwriteBED

Dependencies:codacorpcordata.tablelatticeMASSMatrixMatrixModelsmcmcMCMCpackquantregRcppRcppArmadilloSparseMstatmodsurvival